Usage

Installation

To use equiflow, first install it using pip:

$ pip install equiflow

Using equiflow

To harmonize EHR data and retrieve generic drug names, you can use the equiflow class and its methods. Below is an example of how to set up and use EHRmonize:

from equiflow import EquiFlow
import pandas as pd

data = pd.read_csv('data.csv')

eqfl = EquiFlow(
   data,
   initial_cohort_label = 'in original dataset',
   categorical = ['sex', 'race', 'english'],
   nonnormal = ['sofa']
)

eqfl.add_exclusion(
   mask = data.english.notnull(),
   exclusion_reason = 'missing English Proficiency',
   new_cohort_label = 'with English Proficiency data'
)

eqfl.plot_flows()